Welcome to the DIYelectronics - Nanopore Sequencing project~!
This is the collaborative work space of the DIYelectronics Nanopore Sequencing community
Project overview
The aim of this Biocurious community project is to build DIYelectronics, particularly a DIY DNA Sequencing Nanopore. The concept is to replicate proven DNA Nanopore Sequencing methods in a DIY fashion (ultimately for under $200), possibly improving upon existing methods. The general concept is to use scotch tape and the alpha-hemolysin (Hla) protein to make a sequencing nanopore, and a pico-sampling chip to read and identify the electrical signature perturbances of the base pair nucleotides as they pass through the nanopore.
Project steps
- DNA Nanopore Sequencing (DNA strand is 23 angstroms wide; nanopore width should be 2-3nm (roughly the same size))
- Obtain alpha-hemolysin (Hla) protein; test with E. coli bacteria
- Obtain strand of DNA
- gBlocks gene fragments from IDT
- Test electrolytes to modulate speed of DNA pass through pore
- Sample prep: PDMS microfluidics
- Electronic reading of sequencing - (spec for this?)
- Ion channel reading circuits (low-current, low-noise)
- Pico-sampling chip (TI, Analog Devices, ??) - 1 picoamp resolution, dynamic range (10 nano-amps to full-scale channel))
- ADC and Op-amp
- Open source PCB software; Mentor Graphics
- Software results analysis and Interpretation (deep-learning statistical analysis)
- Project iteration and cost-reduction
Resources/published literature
- DNA Nanopore Sequencing
- Electronic read-outs: ACD, Op-Amp